Difference between revisions of "Main Page"

Revision as of 18:05, 14 December 2011

LipidXplorer Wiki

News

2011-12-14 LipidXplorer Version 1.2.2 released

The recent version of LipidXplorer can be downloaded at [LipidXplorer on Sourceforge]. There can be found also an update in form of a *.zip file.

See LipidXplorer Version 1.2.2 for infos.

2011-08-05 LipidXplorer Version 1.2.1 released

The recent version of LipidXplorer can be downloaded at [LipidXplorer on Sourceforge]. There can be found also an update in form of a *.zip file.

Important bugfixes were done on the MFQL language and the MS/MS averaging algorithm. Now both work better! Please update!

2011-07-22 LipidXplorer Version 1.2 released

The new version of LipidXplorer can be downloaded at [LipidXplorer on Sourceforge].

It includes all new features from 2010-10-11.

LipidXplorer Documentation

MFQL library

Frequently Asked Questions (FAQ)

LXMerge: A tool for merging multiple results

Get LipidXplorer

LipidXplorer is published under GPL and available here: [LipidXplorer on Sourceforge]. Check out the LipidXplorer installation instructions for help.

Articles using LipidXplorer

Herzog, R., Schwudke, D., Schuhmann, K., Sampaio, J.L., Bornstein, S.R., Schroeder, M., and Shevchenko, A. 2011. A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol 12(1): R8.

Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV. 2010. Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans. Angew Chem Int Ed Engl. 49(49):9430-5.

Graessler J, Schwudke D, Schwarz PE, Herzog R, Shevchenko A, Bornstein SR: Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients. PLoS One 2009, 4:e6261.

Contact

For any questions and suggestions please put them on the [LipidXplorer Google Group]

If you want to contribute to the Wiki please write to herzog@mpi-cbg.de or also to the google group.

Known bugs

Please check out the [LipidXplorer Google Group] to be up-to-date on found bugs.

Bug reports

Please send Bug reports directly to herzog@mpi-cbg.de

Example spectra

Example spectra for the LipidXplorer tutorial

Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:File:Spectra tutorial.zip

All spectra used in the LipidXplorer article

Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):File:Spectra article.zip

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 It includes all new features from 2010-10-11.
-====2011-07-7 relative intensity====
-LipidXplorer now supports the input of a relative intensity. The relative intensity
-is the percentage of the base peak when averaging the individual scans in the import.
-For the averaging, LipidXplorer takes the average base peak intensity. Once aligned, the relative intensity orients at the maximum base peak intensity of
-all imported samples.
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