2013-06-26 New release: LipidXplorer Version 1.2.6
The new version LipidXplorer v1.2.6 is out. It comprises smaller bug fixes on reporting syntax errors and errors with the GUI. The MS-Tools panel was crashing, this is fixed now, too. Further, I finally added the LX-Merge tool to the LX package. Please see LipidXplorer Installation for instructions.
2013-04-03 New release: LipidXplorer Version 1.2.5
The new version LipidXplorer v1.2.5 is out. The main changes include the possibility to run LipidXplorer from command line, additional elements and some important bug fixes. See README for details. Please see LipidXplorer Installation for instructions.
2012-07-16 New release: LipidXplorer Version 1.2.4
The new version LipidXplorer v1.2.4 can now be run with Python 2.6 64Bit and Python 2.7 64Bit. Using the 64Bit version of LipidXplorer needs the installation of the 64Bit versions of wxPython and NumPy. Please see LipidXplorer Installation for instructions.
LipidXplorer will be further developed all the time. If you have suggestions for useful features, please write to the LipidXplorer mailing list and we will post them here. We also will post a status report on the suggested features: the LipidXplorer wishlist.
Lipotype is a spin-off company from the Kai Simons and Andrej Shevchenko labs of the Max-Planck-Institute of Molecular Cell Biology and Genetics in Dresden, Germany. The company developed LipidXplorer further to allow high-throughtput lipid analysis. The new software is incorporated in a range of services offered by Lipotype. For further details please see: www.lipotype.com
Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S and Raghu P: RDGBα, a PI-PA transfer protein regulates G-protein coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction JCS 2015 July
Hebbar S, Schulz W D, Sauer U and Schwudke D :Laser Capture Microdissection Coupled with On-Column Extraction LC-MSn Enables Lipidomics of Fluorescently Labeled Drosophila Neurons Anal. Chem. 2014 May 12, 86(11)
Gaessler J, Bornstein T D, Goel D, Bhalla V P, Lohmann T, Wolf T, Koch M, Qin Y, Licinio J, Wong M-L, Chavakis T, Xu A, Shevchenko A, Schuhmann K, Schwarz P E H, Patel A, Bornstein S R:Lipidomic profiling before and after Roux-en-Y gastric bypass in obese patients with diabetes The Pharmacogenomics Journal 2013 Dec 24
Herzog R, Schwudke D, Shevchenko A:UNIT 14.12 LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms Current Protocols in Bioinformatics 2013 Oct 15
For any questions and suggestions please put them on the [LipidXplorer Google Group]
If you do not want to join google, please write me (firstname.lastname@example.org) an email and I'll add you to the group.
If you want to contribute to the Wiki please write to email@example.com or also to the google group.
Please check out the [LipidXplorer Google Group] to be up-to-date on found bugs.
Please send Bug reports directly to firstname.lastname@example.org
Example spectra for the LipidXplorer tutorial
- Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:File:Spectra tutorial.zip
All spectra used in the LipidXplorer article
- Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):File:Spectra article.zip