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| − | =='''LipidXplorer Wiki'''== | + | =='''LipidXplorer New Wiki'''== |
| − | | + | Please go to [[https://lifs.isas.de/wiki/index.php/Main_Page| the new wikipage]] |
| − | <div style="width:49%; float:left; margin-top: 5px">
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| − | === [[LipidXNews|News]] ===
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| − | <div id="small">
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| − | ====2016-05-09 New release: LipidXplorer Version 1.2.7====
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| − | The the new version [https://cloud.mpi-cbg.de/index.php/s/Z5slSEynLpiO8LC Single file installer for Windows].
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| − | The old version [http://sourceforge.net/projects/lipidxplorer/files/LipidXplorer-1.2.7.zip/download LipidXplorer v1.2.7] can now be downloaded. It includes some minor bug fixes and some speed improvements for MFQL lipid identification.
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| − | also improved error logging
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| − | </div>
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| − | </div>
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| − | <div id="grey">
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| − | === [[LipidXplorer Documentation|LipidXplorer Documentation]] ===
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| − | === [[MFQL library|MFQL library]] ===
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| − | <!-- === [[FAQ|Frequently Asked Questions (FAQ)]] === -->
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| − | === [[FAQ|Troubleshooting]] ===
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| − | === [[LipidXMergingTool|LXMerge: A tool for merging multiple results]] ===
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| − | <!-- === [https://git.mpi-cbg.de/mirandaa/MS_Bin_Filter/wikis/home MSPeakStrianer]=== -->
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| − | <!-- === [[Help:Contents|How to edit the LipidXplorer wiki]] === -->
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| − | </div>
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| − | <div id="grey">
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| − | ===Get LipidXplorer===
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| − | If you are on Windows you can try the [https://cloud.mpi-cbg.de/index.php/s/Z5slSEynLpiO8LC Single file installer for Windows]
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| − | LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.
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| − | </div>
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| − | <div id="grey">
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| − | ===Feature suggestions===
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| − | LipidXplorer will be further developed all the time. If you have suggestions for useful features, please write to the LipidXplorer mailing list and we will post them here. We also will post a status report on the suggested features: [[LipidXplorer wishlist| the LipidXplorer wishlist]].
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| − | </div>
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| − | </div>
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| − | <div style="width:49%; float:right; margin-top: 5px;">
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| − | <div id="grey">
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| − | ===[[Articles_Using_LipidXplorer | LipidXplorer MFQL Bibliography ]]===
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| − | [[LX Reference Yadav 2015 | Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S and Raghu P: '''RDGBα, a PI-PA transfer protein regulates G-protein coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction''' ''JCS 2015 July'']]
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| − | [[LX Reference Khaliullina 2015 | Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S:'''Endocannabinoids are conserved inhibitors of the Hedgehog pathway''' ''PNAS 2015 Feb 2'']]
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| − | [[LX Reference Hebbar 2014 | Hebbar S, Schulz W D, Sauer U and Schwudke D :'''Laser Capture Microdissection Coupled with On-Column Extraction LC-MSn Enables Lipidomics of Fluorescently Labeled Drosophila Neurons''' ''Anal. Chem. 2014 May 12, 86(11)'']]
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| − | [[LX Reference Papan 2014 | Papan C, Penkov S, Herzog R, Thiele C, Kurzchalia T, Shevchenko A:'''Systematic screening for novel lipids by shotgun lipidomics.''' ''Anal. Chem. 2014 Jan 28, 86(5)'']]
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| − | [[LX Reference Graessler 2013 | Gaessler J, Bornstein T D, Goel D, Bhalla V P, Lohmann T, Wolf T, Koch M, Qin Y, Licinio J, Wong M-L, Chavakis T, Xu A, Shevchenko A, Schuhmann K, Schwarz P E H, Patel A, Bornstein S R:'''Lipidomic profiling before and after Roux-en-Y gastric bypass in obese patients with diabetes''' ''The Pharmacogenomics Journal 2013 Dec 24'']]
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| − | [[LX Reference Herzog 2013 | Herzog R, Schwudke D, Shevchenko A:'''UNIT 14.12 LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms''' ''Current Protocols in Bioinformatics 2013 Oct 15'']]
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| − | </div>
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| − | </div>
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| − | <div id="grey">
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| − | ===Contact===
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| − | For any '''questions''' and '''suggestions''' please put them on the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]]
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| − | If you do not want to join google, please write us (mirandaa@mpi-cbg.de or herzog@mpi-cbg.de) an email and I'll add you to the group.
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| − | If you want to contribute to the Wiki please write to mirandaa@mpi-cbg.de or herzog@mpi-cbg.de or also to the google group.
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| − | </div>
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| − | <div id="grey">
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| − | ===Known bugs===
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| − | Please check out the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]] to be up-to-date on found bugs.
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| − | </div>
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| − | <div id="grey">
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| − | ===Bug reports===
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| − | Please send Bug reports directly to mirandaa@mpi-cbg.de
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| − | | |
| − | please send the unmodified file named reame.txt found in the lipidxplorer folder
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| − | </div>
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| − | <div id="grey">
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| − | ===Example spectra===
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| − | =====Example spectra for the LipidXplorer tutorial=====
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| − | * Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:[[File:spectra_tutorial.zip]]
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| − | =====All spectra used in the LipidXplorer article=====
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| − | * Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):[[File:spectra_article.zip]]
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| − | </div>
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| − | </div>
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