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| − | =='''LipidXplorer Wiki'''== | + | =='''LipidXplorer New Wiki'''== |
| − | | + | Please go to [[https://lifs.isas.de/wiki/index.php/Main_Page | the new wikipage]] |
| − | <div style="width:49%; float:left; margin-top: 5px">
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| − | === [[LipidXNews|News]] ===
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| − | ====2016-05-09 New release: LipidXplorer Version 1.2.7====
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| − | The new version [http://sourceforge.net/projects/lipidxplorer/files/LipidXplorer-1.2.7.zip/download LipidXplorer v1.2.7] can now be downloaded. It includes some minor bug fixes and some speed improvements for MFQL lipid identification.
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| − | ====2013-06-26 New release: LipidXplorer Version 1.2.6====
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| − | The new version [http://sourceforge.net/projects/lipidxplorer/files/LipidXplorer-1.2.6.zip/download LipidXplorer v1.2.6] is out. It comprises smaller bug fixes on reporting syntax errors and errors with the GUI. The MS-Tools panel was crashing, this is fixed now, too. Further, I finally added the LX-Merge tool to the LX package. Please see [[LipidXplorer Installation]] for instructions.
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| − | ====2013-04-03 New release: LipidXplorer Version 1.2.5====
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| − | The new version [http://sourceforge.net/projects/lipidxplorer/files/LipidXplorer-1.2.5.zip/download LipidXplorer v1.2.5] is out. The main changes include the possibility to run LipidXplorer from command line, additional elements and some important bug fixes. See [http://sourceforge.net/projects/lipidxplorer/files/README.txt/download README] for details. Please see [[LipidXplorer Installation]] for instructions.
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| − | </div>
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| − | </div>
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| − | === [[LipidXplorer Documentation|LipidXplorer Documentation]] ===
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| − | === [[MFQL library|MFQL library]] ===
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| − | <!-- === [[FAQ|Frequently Asked Questions (FAQ)]] === -->
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| − | === [[FAQ|Troubleshooting]] ===
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| − | === [[LipidXMergingTool|LXMerge: A tool for merging multiple results]] ===
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| − | <!-- === [[Help:Contents|How to edit the LipidXplorer wiki]] === -->
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| − | </div>
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| − | ===Get LipidXplorer===
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| − | LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.
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| − | </div>
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| − | ===Feature suggestions===
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| − | LipidXplorer will be further developed all the time. If you have suggestions for useful features, please write to the LipidXplorer mailing list and we will post them here. We also will post a status report on the suggested features: [[LipidXplorer wishlist| the LipidXplorer wishlist]].
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| − | </div>
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| − | Lipotype is a spin-off company from the Kai Simons and Andrej Shevchenko labs of the Max-Planck-Institute of Molecular Cell Biology and Genetics in Dresden, Germany. The company developed LipidXplorer further to allow high-throughtput lipid analysis. The new software is incorporated in a range of services offered by Lipotype. For further details please see: [http://www.lipotype.com www.lipotype.com]
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| − | [[File:800-logo-white-background.png|center|link=http://www.lipotype.com]]
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| − | </div>
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| − | </div>
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| − | <div style="width:49%; float:right; margin-top: 5px;">
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| − | ===[[Articles_Using_LipidXplorer | LipidXplorer MFQL Bibliography ]]===
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| − | [[LX Reference Yadav 2015 | Yadav S, Garner K, Georgiev P, Li M, Gomez-Espinosa E, Panda A, Mathre S, Okkenhaug H, Cockcroft S and Raghu P: '''RDGBα, a PI-PA transfer protein regulates G-protein coupled PtdIns(4,5)P2 signalling during Drosophila phototransduction''' ''JCS 2015 July'']]
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| − | [[LX Reference Khaliullina 2015 | Khaliullina H, Bilgin M, Sampaio JL, Shevchenko A, Eaton S:'''Endocannabinoids are conserved inhibitors of the Hedgehog pathway''' ''PNAS 2015 Feb 2'']]
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| − | [[LX Reference Hebbar 2014 | Hebbar S, Schulz W D, Sauer U and Schwudke D :'''Laser Capture Microdissection Coupled with On-Column Extraction LC-MSn Enables Lipidomics of Fluorescently Labeled Drosophila Neurons''' ''Anal. Chem. 2014 May 12, 86(11)'']]
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| − | [[LX Reference Papan 2014 | Papan C, Penkov S, Herzog R, Thiele C, Kurzchalia T, Shevchenko A:'''Systematic screening for novel lipids by shotgun lipidomics.''' ''Anal. Chem. 2014 Jan 28, 86(5)'']]
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| − | [[LX Reference Graessler 2013 | Gaessler J, Bornstein T D, Goel D, Bhalla V P, Lohmann T, Wolf T, Koch M, Qin Y, Licinio J, Wong M-L, Chavakis T, Xu A, Shevchenko A, Schuhmann K, Schwarz P E H, Patel A, Bornstein S R:'''Lipidomic profiling before and after Roux-en-Y gastric bypass in obese patients with diabetes''' ''The Pharmacogenomics Journal 2013 Dec 24'']]
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| − | [[LX Reference Herzog 2013 | Herzog R, Schwudke D, Shevchenko A:'''UNIT 14.12 LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms''' ''Current Protocols in Bioinformatics 2013 Oct 15'']]
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| − | </div>
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| − | </div>
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| − | ===Contact===
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| − | For any '''questions''' and '''suggestions''' please put them on the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]]
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| − | If you do not want to join google, please write us (mirandaa@mpi-cbg.de or herzog@mpi-cbg.de) an email and I'll add you to the group.
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| − | If you want to contribute to the Wiki please write to mirandaa@mpi-cbg.de or herzog@mpi-cbg.de or also to the google group.
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| − | ===Known bugs===
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| − | Please check out the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]] to be up-to-date on found bugs.
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| − | ===Bug reports===
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| − | Please send Bug reports directly to herzog@mpi-cbg.de
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| − | ===Example spectra===
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| − | =====Example spectra for the LipidXplorer tutorial=====
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| − | * Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:[[File:spectra_tutorial.zip]]
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| − | =====All spectra used in the LipidXplorer article=====
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| − | * Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):[[File:spectra_article.zip]]
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| − | </div>
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