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| − | =='''LipidXplorer Wiki'''== | + | =='''LipidXplorer New Wiki'''== |
| − | | + | Please go to [[https://lifs.isas.de/wiki/index.php/Main_Page | the new wikipage]] |
| − | <div style="width:49%; float:left; margin-top: 5px">
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| − | === [[LipidXNews|News]] ===
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| − | ====2012-07-16 New release: LipidXplorer Version 1.2.4====
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| − | The new version of LipidXplorer can now be run with Python 2.6 64Bit and Python 2.7 64Bit. Using the 64Bit version of LipidXplorer needs the installation of the 64Bit versions of wxPython and NumPy. Please see [] for instructions.
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| − | ====2012-06-20 New release: LipidXplorer Version 1.2.3====
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| − | The new version of LipidXplorer is now available: [http://sourceforge.net/projects/lipidxplorer/files/LipidXplorer-1.2.3.zip/download LipidXplorer v1.2.3]. Just unzip it and copy it to a place of your choice. Start it with double clicking on 'LipidXplorer.py'. There is no installer and no need to overwrite your old version (which you can delete confidently).
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| − | It provides a lot of bug fixes, improvements in the identification speed, spectra import and user interface. Please see the list of changes [[news lipidxplorer 1.2.3|here]].
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| − | ====2012-02-15 Bug found in LipidXplorer Version 1.2.2====
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| − | '''Attention''': Another bug was found in the current version of LipidXplorer. The conversion of profile raw files with the "mc.raw profile" setting to into the LipidXplorer compatible file format produces wrong results. Please download [http://idisk-srv1.mpi-cbg.de/~herzog/msconvert-with-centroization.bat this file] (right click and save as) and copy it into your bin folder of LipidXplorer and overwrite the old file.
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| − | ====2012-01-17 New LipidXplorer paper published====
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| − | We are happy to announce the recent publication about LipidXplorers newly implemented support for precursor ion / neutral loss scanned (PIS/NLS) spectra on triple quad mass spectrometers. Now it supports the whole range of major mass spectra technologies which is used in shotgun lipidomics. Here is a link to the article: [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0029851| LipidXplorer: A Software for Consensual Cross-Platform Lipidomics]
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| − | </div>
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| − | </div>
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| − | === [[LipidXplorer Documentation|LipidXplorer Documentation]] ===
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| − | === [[MFQL library|MFQL library]] ===
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| − | <!-- === [[FAQ|Frequently Asked Questions (FAQ)]] === -->
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| − | === [[FAQ|Troubleshooting]] ===
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| − | === [[LipidXMergingTool|LXMerge: A tool for merging multiple results]] ===
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| − | <!-- === [[Help:Contents|How to edit the LipidXplorer wiki]] === -->
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| − | </div>
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| − | ===Get LipidXplorer===
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| − | LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.
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| − | </div>
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| − | ===Feature suggestions===
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| − | LipidXplorer will be further developed all the time. If you have suggestions for useful features, please write to the LipidXplorer mailing list and we will post them here. We also will post a status report on the suggested features: [[LipidXplorer wishlist| the LipidXplorer wishlist]].
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| − | </div>
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| − | </div>
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| − | <div style="width:49%; float:right; margin-top: 5px;">
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| − | ===[[Articles_Using_LipidXplorer | LipidXplorer Bibliography ]]===
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| − | [[LX Reference Estronca 2012 | Estronca, LM; Silva, JC; Sampaio, JL; Shevchenko, A; Verkade, P; Vaz, AD; Vaz, WL; Vieira, OV '''Molecular etiology of atherogenesis - in vitro induction of lipidosis in macrophages with a new LDL model.''' ''PloS ONE 7: e34822.'']]
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| − | [[LX Reference Klose 2012 | Klose, C; Surma, MA; Gerl, MJ; Meyenhofer, F; Shevchenko, A; Simons, K. '''Flexibility of a eukaryotic lipidome - insights from yeast lipidomics.''' ''PloS ONE 7: e35063.'']]
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| − | [[LX Reference Schuhmann 2012 | Kai Schuhmann, Reinaldo Almeida, Mark Baumert, Ronny Herzog, Stefan R. Bornstein, Andrej Shevchenko. '''Shotgun lipidomics on a LTQ Orbitrap mass spectrometer by successive switching between acquisition polarity modes''' ''JMS 2012 Jan 26. 47(1)'']]
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| − | [[LX Reference Herzog 2012 | Ronny Herzog, Kai Schuhmann, Dominik Schwudke, Julio L. Sampaio, Stefan R. Bornstein, Michael Schroeder, Andrej Shevchenko. '''LipidXplorer: A Software for Consensual Cross-Platform Lipidomics''' ''PLoS ONE 7(1): e29851. doi:10.1371/journal.pone.0029851'']]
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| − | </div>
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| − | ===Contact===
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| − | For any '''questions''' and '''suggestions''' please put them on the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]]
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| − | If you do not want to join google, please write me (herzog@mpi-cbg.de) an email and I'll add you to the group.
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| − | If you want to contribute to the Wiki please write to herzog@mpi-cbg.de or also to the google group.
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| − | ===Known bugs===
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| − | Please check out the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]] to be up-to-date on found bugs.
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| − | ===Bug reports===
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| − | Please send Bug reports directly to herzog@mpi-cbg.de
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| − | ===Example spectra===
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| − | =====Example spectra for the LipidXplorer tutorial=====
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| − | * Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:[[File:spectra_tutorial.zip]]
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| − | =====All spectra used in the LipidXplorer article=====
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| − | * Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):[[File:spectra_article.zip]]
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| − | </div>
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