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| − | =='''LipidXplorer Wiki'''== | + | =='''LipidXplorer New Wiki'''== |
| − | | + | Please go to [[https://lifs.isas.de/wiki/index.php/Main_Page | the new wikipage]] |
| − | <div style="width:49%; float:left; margin-top: 5px">
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| − | === [[LipidXNews|News]] ===
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| − | ====2012-01-13 Bug found in LipidXplorer Version 1.2.2====
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| − | '''Attention''': A bug occurred in the file lpdxGUI.pyw when spectra are converted with the option "mc.wiff". The "Thinking..." dialog won't disappear and the Debug window contains an error message with the last line saying: "NameError: global name 'rawOut' is not defined". Please use msconvert manually for conversion of *.wiff files to *.mzXML. In the next version of LipidXplorer this bug will be fixed.
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| − | ====2011-12-14 LipidXplorer Version 1.2.2 released====
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| − | The recent version of LipidXplorer can be downloaded at [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. There can be found also an update in form of a *.zip file.
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| − | See [[News_2011-12-14|LipidXplorer Version 1.2.2]] for infos.
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| − | ====2011-08-05 LipidXplorer Version 1.2.1 released====
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| − | The recent version of LipidXplorer can be downloaded at [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. There can be found also an update in form of a *.zip file.
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| − | Important bugfixes were done on the MFQL language and the MS/MS averaging algorithm. Now both work better! Please update!
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| − | </div>
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| − | </div>
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| − | === [[LipidXplorer Documentation|LipidXplorer Documentation]] ===
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| − | === [[MFQL library|MFQL library]] ===
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| − | === [[FAQ|Frequently Asked Questions (FAQ)]] ===
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| − | === [[LipidXMergingTool|LXMerge: A tool for merging multiple results]] ===
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| − | <!-- === [[Help:Contents|How to edit the LipidXplorer wiki]] === -->
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| − | </div>
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| − | ===Get LipidXplorer===
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| − | LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. Check out [[LipidXplorer Installation | the LipidXplorer installation instructions]] for help.
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| − | </div>
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| − | </div>
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| − | <div style="width:49%; float:right; margin-top: 5px;">
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| − | ===[[Articles Using LipidXplorer | Articles using LipidXplorer]]===
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| − | [[LX Reference Herzog | Herzog, R., Schwudke, D., Schuhmann, K., Sampaio, J.L., Bornstein, S.R., Schroeder, M., and Shevchenko, A. 2011. '''A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language.''' Genome Biol 12(1): R8.]]
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| − | [[LX Reference Penkov | Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV. 2010. '''Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans.''' Angew Chem Int Ed Engl. 49(49):9430-5.]]
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| − | [[LX Reference Greassler | Graessler J, Schwudke D, Schwarz PE, Herzog R, Shevchenko A, Bornstein SR: '''Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients.''' PLoS One
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| − | 2009, 4:e6261.]]
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| − | </div>
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| − | </div>
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| − | ===Contact===
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| − | For any '''questions''' and '''suggestions''' please put them on the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]]
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| − | If you want to contribute to the Wiki please write to herzog@mpi-cbg.de or also to the google group.
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| − | </div>
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| − | ===Known bugs===
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| − | Please check out the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]] to be up-to-date on found bugs.
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| − | </div>
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| − | ===Bug reports===
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| − | Please send Bug reports directly to herzog@mpi-cbg.de
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| − | </div>
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| − | ===Example spectra===
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| − | =====Example spectra for the LipidXplorer tutorial=====
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| − | * Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:[[File:spectra_tutorial.zip]]
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| − | =====All spectra used in the LipidXplorer article=====
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| − | * Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):[[File:spectra_article.zip]]
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| − | </div>
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| − | </div>
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