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| − | =='''LipidXplorer Wiki'''== | + | =='''LipidXplorer New Wiki'''== |
| − | | + | Please go to [[https://lifs.isas.de/wiki/index.php/Main_Page | the new wikipage]] |
| − | <div style="width:49%; float:left; margin-top: 5px;">
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| − | === [[LipidXNews|News]] ===
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| − | ====2011-08-05 LipidXplorer Version 1.2.1 released====
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| − | The recent version of LipidXplorer can be downloaded at [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]]. There can be found also an update in form of a *.zip file.
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| − | Important bugfixes were done on the MFQL language and the MS/MS averaging algorithm. Now both work better! Please update!
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| − | </div>
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| − | ====2011-07-22 LipidXplorer Version 1.2 released====
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| − | The new version of LipidXplorer can be downloaded at [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]].
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| − | It includes all new features from 2010-10-11.
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| − | ====2011-07-7 relative intensity====
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| − | LipidXplorer now supports the input of a relative intensity. The relative intensity
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| − | is the percentage of the base peak when averaging the individual scans in the import.
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| − | For the averaging, LipidXplorer takes the average base peak intensity. Once aligned, the relative intensity orients at the maximum base peak intensity of
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| − | all imported samples.
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| − | </div>
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| − | <div id="grey">
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| − | ==='''Content'''===
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| − | === [[LipidXplorer Documentation|LipidXplorer Documentation]] ===
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| − | === [[MFQL library|MFQL library]] ===
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| − | === [[FAQ|Frequently Asked Questions (FAQ)]] ===
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| − | | |
| − | === [[LipidXMergingTool|LXMerge: A tool for merging multiple results]] ===
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| − | === [[Help:Contents|How to edit the LipidXplorer wiki]] ===
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| − | </div>
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| − | ==Get LipidXplorer==
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| − | LipidXplorer is published under GPL and available here: [[http://sourceforge.net/projects/lipidxplorer/files/ LipidXplorer on Sourceforge]].
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| − | Note that it is still a beta version and might have some bugs.
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| − | </div>
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| − | </div>
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| − | <div style="width:49%; float:right; margin-top: 5px;">
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| − | ==='''Articles using LipidXplorer'''===
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| − | [[LipidXplorerRef1 | Herzog, R., Schwudke, D., Schuhmann, K., Sampaio, J.L., Bornstein, S.R., Schroeder, M., and Shevchenko, A. 2011. '''A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language.''' Genome Biol 12(1): R8.]]
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| − | [[LipidXplorerRef2 | Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV. 2010. '''Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans.''' Angew Chem Int Ed Engl. 49(49):9430-5.]]
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| − | [[LipidXplorerRef3 | Graessler J, Schwudke D, Schwarz PE, Herzog R, Shevchenko A, Bornstein SR: '''Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients.''' PLoS One
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| − | 2009, 4:e6261.]]
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| − | ==='''Contact'''===
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| − | For any '''questions''' and '''suggestions''' please put them on the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]]
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| − | If you want to contribute to the Wiki please write to herzog@mpi-cbg.de or also to the google group.
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| − | ===Known bugs===
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| − | Please check out the [[http://groups.google.com/group/lipidxplorer-discussion-group LipidXplorer Google Group]] to be up-to-date on found bugs.
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| − | ===Bug reports===
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| − | Please send Bug reports directly to herzog@mpi-cbg.de
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| − | ==Example spectra==
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| − | ===Example spectra for the LipidXplorer tutorial===
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| − | * Spectra of E.coli acquired on the LTQ Orbitrap with different resolution settings:[[File:spectra_tutorial.zip]]
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| − | ===All spectra used in the LipidXplorer article===
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| − | * Spectra of E.coli and bovine heart acquired on LTQ Orbitrap XL, LTQ Orbitrap Velos and ABI QStar pulsar (in DDA and MPIS mode):[[File:spectra_article.zip]]
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