Difference between revisions of "LipidXplorer msconvert conversion"
From LipidXplorer
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Only a few mass spectrometers directly produce mzXML/mzML files but there are several tools available that generate mzXML/mzML files from native acquired files. | Only a few mass spectrometers directly produce mzXML/mzML files but there are several tools available that generate mzXML/mzML files from native acquired files. | ||
| − | + | MSConvert is the currently most featured converter ([http://proteowizard.sourceforge.net/downloads.shtml MSConvert]) and further it is under ongoing maintenance. It supports various vendor file formats: | |
* Agilent Mass Hunter Data Access Component Library | * Agilent Mass Hunter Data Access Component Library | ||
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* Waters Raw Data Access Component Library | * Waters Raw Data Access Component Library | ||
* AB Sciex WIFF Reader Library | * AB Sciex WIFF Reader Library | ||
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| + | ===Download and installation=== | ||
| + | |||
| + | Download MSConvert from [http://proteowizard.sourceforge.net/downloads.shtml MSConvert]. It is part of Protewizard, a tool for proteomics. Just click on the button "I agree to the license terms, download Proteowizard" and install the downloaded file. | ||
| + | |||
| + | For LipidXplorer set the options in MSConvert like this: | ||
Revision as of 10:59, 6 December 2012
MSConvert
Only a few mass spectrometers directly produce mzXML/mzML files but there are several tools available that generate mzXML/mzML files from native acquired files.
MSConvert is the currently most featured converter (MSConvert) and further it is under ongoing maintenance. It supports various vendor file formats:
- Agilent Mass Hunter Data Access Component Library
- Waters Raw Data Access Component Library
- Bruker CompassXtract
- Thermo-Scientific MSFileReader Library
- Waters Raw Data Access Component Library
- AB Sciex WIFF Reader Library
Download and installation
Download MSConvert from MSConvert. It is part of Protewizard, a tool for proteomics. Just click on the button "I agree to the license terms, download Proteowizard" and install the downloaded file.
For LipidXplorer set the options in MSConvert like this:
