List of publiclications which utilized LipidXplorer
Click on a publication to see the used MFQL queries and mass spectrometer settings. The list is ordered by year.
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Estronca, LM; Silva, JC; Sampaio, JL; Shevchenko, A; Verkade, P; Vaz, AD; Vaz, WL; Vieira, OV Molecular etiology of atherogenesis - in vitro induction of lipidosis in macrophages with a new LDL model. PloS ONE 7: e34822.
Klose, C; Surma, MA; Gerl, MJ; Meyenhofer, F; Shevchenko, A; Simons, K. Flexibility of a eukaryotic lipidome - insights from yeast lipidomics. PloS ONE 7: e35063.
Ronny Herzog, Kai Schuhmann, Dominik Schwudke, Julio L. Sampaio, Stefan R. Bornstein, Michael Schroeder, Andrej Shevchenko. LipidXplorer: A Software for Consensual Cross-Platform Lipidomics PLoS ONE 7(1): e29851. doi:10.1371/journal.pone.0029851
Gerl MJ, Sampaio JL, Urban S, Kalvodova L, Verbavatz JM, Binnington B, Lindemann D, Lingwood CA, Shevchenko A, Schroeder C, Simons K. Quantitative analysis of the lipidomes of the influenza virus envelope and MDCK cell apical membrane. J Cell Biol. 2012 Jan 16. [Epub ahead of print]
Ayciriex S, Le Guédard M, Camougrand N, Velours G, Schoene M, Leone S, Wattelet-Boyer V, Dupuy JW, Shevchenko A, Schmitter JM, Lessire R, Bessoule JJ, Testet E. YPR139c/LOA1 encodes a novel lysophosphatidic acid acyltransferase associated with lipid droplets and involved in TAG homeostasis. Mol Biol Cell. 2012 Jan;23(2):233-246. Epub 2011 Nov 16.
Fernandez C, Schuhmann K, Herzog R, Fielding B, Frayn K, Shevchenko A, James P, Holm C, Ström K. Altered desaturation and elongation of fatty acids in hormone-sensitive lipase null mice. PLoS One. 2011;6(6):e21603. Epub 2011 Jun 29.
Herzog, R., Schwudke, D., Schuhmann, K., Sampaio, J.L., Bornstein, S.R., Schroeder, M., and Shevchenko, A. 2011. A novel informatics concept for high-throughput shotgun lipidomics based on the molecular fragmentation query language. Genome Biol 12(1): R8.
Penkov S, Mende F, Zagoriy V, Erkut C, Martin R, Pässler U, Schuhmann K, Schwudke D, Gruner M, Mäntler J, Reichert-Müller T, Shevchenko A, Knölker HJ, Kurzchalia TV. 2010. Maradolipids: diacyltrehalose glycolipids specific to dauer larva in Caenorhabditis elegans. Angew Chem Int Ed Engl. 49(49):9430-5.
Carvalho M, Schwudke D, Sampaio JL, Palm W, Riezman I, Dey G, Gupta GD, Mayor S, Riezman H, Shevchenko A, Kurzchalia TV, Eaton S.Survival strategies of a sterol auxotroph. Development. 2010 Nov;137(21):3675-85.
Graessler J, Schwudke D, Schwarz PE, Herzog R, Shevchenko A, Bornstein SR: Top-down lipidomics reveals ether lipid deficiency in blood plasma of hypertensive patients. PLoS One
2009, 4:e6261.
Raa H, Grimmer S, Schwudke D, Bergan J, Wälchli S, Skotland T, Shevchenko A, Sandvig K.
Glycosphingolipid requirements for endosome-to-Golgi transport of Shiga toxin. Traffic. 2009 Jul;10(7):868-82. Epub 2009 May 6.
Saito K, Dubreuil V, Arai Y, Wilsch-Bräuninger M, Schwudke D, Saher G, Miyata T, Breier G, Thiele C, Shevchenko A, Nave KA, Huttner WB.Ablation of cholesterol biosynthesis in neural stem cells increases their VEGF expression and angiogenesis but causes neuron apoptosis. Proc Natl Acad Sci U S A. 2009 May 19;106(20):8350-5. Epub 2009 May 5.
